Browsing by Author "R.Z. Sayyed"

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A network pharmacology approach with experimental validation to discover protective mechanism of poly herbal extract on diabetes mellitus
(Elsevier B.V., 2024) Amit Kumar Singh; Pradeep Kumar; Sunil Kumar Mishra; KavindraNath Tiwari; Anand Kumar Singh; Ajay Kumar Pandey; Ali A. Shati; Mohammad Y. Alfaifi; SeragEldin I. Elbehairi; R.Z. Sayyed
Objective: Polyherbal extracts (PHE) contain six traditional medicinal plants, and the efficacy of the medicinal plants used in the preparation of this PHE has been confirmed for the treatment of diseases like diabetes mellitus (DM). The aim of this study was to evaluate the efficacy and therapeutic mechanism of PHE through a network pharmacology approach to reveal the protective mechanism of Alpha-Tocospiro A (ATA) present in PHE on DM with experimental validation. Methods: In this study, Lipinski's rule (Swiss ADME) and drug-likeness score (MolSoft's) web pages were used to confirm the drug-likeness of identified constituents in PHE. Swiss Target Prediction (STP) genes were found for ATA-related genes. The DisGeNet database was used to screen genes associated with DM. String created a network diagram of the interactions between the ATA and DM genes. Top-scoring genes from the string network through CytoNCA plugged into Cytoscape 3.8.2 were selected as hub genes. In addition, the ShinyGO database is used to predict GO and KEGG pathway enrichment analyses. Results: A total of 675 and 105 therapeutic genes (STP) were associated with all bioactive compounds and ATA in the PHE screen, respectively. Additionally, a maximum of 2,803 DM-related genes (DisGeNet) were observed. Further, in the analysis, 331, 57 potential (intersecting) genes were identified in the correlation between the target genes of all compounds and ATA, respectively, of PHE and the target genes of DM. The identified hub gene “TNF” for both ATA and PHE was found to be precisely strengthened in 49 pathways, along with 14 signaling pathways out of more than 100 enriched KEGG pathways. This study predicted that ATA activates PI3K/Akt and MAPK pathways enriched with TNF by phosphorylating the insulin receptor (IR) β-subunit. The anti-diabetic activity of PHE was found to be good and primarily confirmed by in vitro α-glucosidase enzyme inhibition activity. Conclusion: The anti-diabetic activity of PHE was found to be effective and was confirmed by the enzyme inhibition activity in the primary study. This study predicted that ATA is a novel drug molecule in PHE that has a targeted mechanism of action and therapeutic effect on DM. © 2024 The Author(s)
Connecting bio-priming approach with integrated nutrient management for improved nutrient use efficiency in crop species
(MDPI AG, 2021) Deepranjan Sarkar; Amitava Rakshit; Ahmad I. Al-Turki; R.Z. Sayyed; Rahul Datta
The increasing demand for qualitative and varietal foods by the consumer society is a big concern for energy production, and utilization of that energy in a judicious manner for sustainable management of resources is a big challenge in the eminent future. Existing resources (land, water, fertilizer, etc.) and their socioeconomic aspects warrant the farming community to adopt alternative strategies aimed at enhancing the use efficiency of inputs and improve the environmental quality. The adaptability of microbes to thrive in different environments has prompted scientists to introduce microbial intervention in the agricultural processes. Bio-priming has the potential to fulfill many objectives of the modern production system with the use of beneficial microorganisms in an eco-friendly manner. Interestingly, it also plays a crucial role in enhancing the nutrient use efficiency of crops. There is rising evidence of a paradigm shift from the use of a single microbe to a consortium approach for efficient rhizosphere engineering in the context of sustainable agriculture. Our understanding of different signaling cascades, rhizosphere chemistry, and other mechanisms of plant–microbial interactions will frame suitable strategies to harness the best ecosystem services including improved resource use efficiency. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
Endophytic nitrogen-fixing bacteria: Untapped treasurer for agricultural sustainability
(Open Science Publishers LLP Inc., 2023) Kusam Lata Rana; Divjot Kour; Tanvir Kaur; Rajeshwari Negi; Rubee Devi; Neelam Yadav; Pankaj Kumar Rai; Sangram Singh; Ashutosh Kumar Rai; Ashok Yadav; R.Z. Sayyed; Ajar Nath Yadav
Nitrogen (N) is one of the vital elements required for proper growth and development of plants. In the earth’s atmosphere, N is available in the form of nitrogen gas (N2) and mostly plants utilize N in the form nitrate (NO3-) and ammonium ion (NH4+) which are fixed through the biological process known as N2 fixation. As N is one of the elements most likely to be limiting to plant growth, this phenomenon provides an alternative to the implementations of chemical fertilizers as source of nutrients which have resulted in the ammonia volatilization, leading to significant impact on global warming in the atmosphere which, further, diverts the focus of scientist to find out eco-friendly technology. Globally, the demand for introducing eco-friendly practices for improving sustainable agriculture productivity has been increased. Since long time, microbes play an important role in providing pollution-free environment. Endophytic microbes being present inside the specific tissues of plants mostly empower in the growth of plants. The endophytic nitrogen-fixing microbe has been well characterized from leguminous as well non-legume crops. Endophytic bacteria belong to different phyla such as Actinobacteria, Bacteroidetes, Firmicutes, and Proteobacteria. The predominant N2-fixing endophytic Burkholderia, Rhizobium, Pseudomonas, Bradyrhizobium, Bacillus, Frankia, Enterobacter, and Azospirillum have been reported from different host plant. Nitrogen-fixing endophytic bacteria has a wide variety of application for maintaining growth of plant, crop yield, and health of soil for sustainable agriculture. The present review focuses on major developments on biodiversity of N-fixing endophytic microbiomes and their role for plant growth promotion and soil health for agroenvironmental sustainability. © 2023 Kusam Lata Rana, et al.
Optimizing nutrient use efficiency, productivity, energetics, and economics of red cabbage following mineral fertilization and biopriming with compatible rhizosphere microbes
(Nature Research, 2021) Deepranjan Sarkar; Ardith Sankar; O. Siva Devika; Sonam Singh; Shikha; Manoj Parihar; Amitava Rakshit; R.Z. Sayyed; Abdul Gafur; Mohammad Javed Ansari; Subhan Danish; Shah Fahad; Rahul Datta
Conventional agricultural practices and rising energy crisis create a question about the sustainability of the present-day food production system. Nutrient exhaustive crops can have a severe impact on native soil fertility by causing nutrient mining. In this backdrop, we conducted a comprehensive assessment of bio-priming intervention in red cabbage production considering nutrient uptake, the annual change in soil fertility, nutrient use efficiency, energy budgeting, and economic benefits for its sustainable intensification, among resource-poor farmers of Middle Gangetic Plains. The compatible microbial agents used in the study include Trichoderma harzianum, Pseudomonas fluorescens, and Bacillus subtilis. Field assays (2016–2017 and 2017–2018) of the present study revealed supplementing 75% of recommended NPK fertilizer with dual inoculation of T. harzianum and P. fluorescens increased macronutrient uptake (N, P, and K), root length, heading percentage, head diameter, head weight, and the total weight of red cabbage along with a positive annual change in soil organic carbon. Maximum positive annual change in available N and available P was recorded under 75% RDF + P. fluorescens + B. subtilis and 75% RDF + T. harzianum + B. subtilis, respectively. Bio-primed plants were also higher in terms of growth and nutrient use efficiency (agronomic efficiency, physiological efficiency, apparent recovery efficiency, partial factor productivity). Energy output (26,370 and 26,630 MJ ha−1), energy balance (13,643 and 13,903 MJ ha−1), maximum gross return (US $ 16,030 and 13,877 ha−1), and net return (US $ 15,966 and 13,813 ha−1) were considerably higher in T. harzianum, and P. fluorescens treated plants. The results suggest the significance of the bio-priming approach under existing integrated nutrient management strategies and the role of dual inoculations in producing synergistic effects on plant growth and maintaining the soil, food, and energy nexus. © 2021, The Author(s).